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Function Annotation
KEGG (Kyoto Encyclopedia of Genes and Genomes)
ARDB (Antibiotic Resistance Genes Database)
BacMet (Antibacterial Biocide & Metal Resistance Genes Database)
CARD (The Comprehensive Antibiotic Resistance Database)
CAZY (Carbohydrate-Active enZymes)
COG (Clusters of Orthologous Groups)
MetaCyc (Metabolic Pathways From all Domains of Life)
MGEs (Mobile Genetic Elements)
NR (Non-redundant Database)
VFDB (Virulence Factors of Bacterial Pathogens)
Sample Comparison
Alpha diversity
Beta diversity
Species Composition
Species Differential Analysis
Microbial-Organ Correlations
Co Expression Network
Correlation Query
Transcriptome
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Mus musculus
Rattus norvegicus
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Ambystoma mexicanum
RNA-Seq
Mus musculus
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Ambystoma mexicanum
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Injury Related Genes
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Correlation
Injured Co Expression Network
Injured Gene Correlation Query
Function
GOBP
KEGG
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1. Overview of SCIGAMA
2. Home Section
3. Microbiome
3.1 Browse
3.2 Search by Microbe
3.3 Function Annotation
3.4 Sample Comparison
3.5 Species Composition
3.6 Species Differential Analysis
4. Transcriptome
4.1 Public Datasets
4.2 Multi-Organ
4.3 Trend
4.4 Expression
4.5 Correlation
4.6 Function
About
Function Annotation / VFDB (Virulence Factors of Bacterial Pathogens)
Ileum
Cecum
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Control
Sham
0 min
30 min
1 hr
6 hr
12 hr
1 d
3 d
5 d
7 d
14 d
1 m
2 m
3 m