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Function Annotation
KEGG (Kyoto Encyclopedia of Genes and Genomes)
ARDB (Antibiotic Resistance Genes Database)
BacMet (Antibacterial Biocide & Metal Resistance Genes Database)
CARD (The Comprehensive Antibiotic Resistance Database)
CAZY (Carbohydrate-Active enZymes)
COG (Clusters of Orthologous Groups)
MetaCyc (Metabolic Pathways From all Domains of Life)
MGEs (Mobile Genetic Elements)
NR (Non-redundant Database)
VFDB (Virulence Factors of Bacterial Pathogens)
Sample Comparison
Alpha diversity
Beta diversity
Species Composition
Species Differential Analysis
Microbial-Organ Correlations
Co Expression Network
Correlation Query
Transcriptome
Public Datasets
Microarray
Mus musculus
Rattus norvegicus
Danio rerio
Ambystoma mexicanum
RNA-Seq
Mus musculus
Rattus norvegicus
Danio rerio
Ambystoma mexicanum
Multi-Organ
Search by Gene
Injury Related Genes
Analysis
Trend
Expression
Search by Gene ID
Search by miRNA ID
Search by TF
Search by GO ID
Search by KEGG Pathway ID
Correlation
Injured Co Expression Network
Injured Gene Correlation Query
Function
GOBP
KEGG
Help
1. Overview of SCIGAMA
2. Home Section
3. Microbiome
3.1 Browse
3.2 Search by Microbe
3.3 Function Annotation
3.4 Sample Comparison
3.5 Species Composition
3.6 Species Differential Analysis
4. Transcriptome
4.1 Public Datasets
4.2 Multi-Organ
4.3 Trend
4.4 Expression
4.5 Correlation
4.6 Function
About
Species Differential Analysis
Site :
Ileum
Cecum
Colon
Time :
Control
Sham
0 min
30 min
1 hr
6 hr
12 hr
1 d
3 d
5 d
7 d
14 d
1 m
2 m
3 m
Run
Result:
Plot by site
Plot by time
Phylogenetic Tree
LDA Table
Linear
Radial
Species_name
Group
Mean
LDA_value
Pvalue